"""Models that produce heatmaps of keypoints from images."""
from typing import Any, Tuple, Union
import torch
from omegaconf import DictConfig
from torchtyping import TensorType
from typeguard import typechecked
from typing_extensions import Literal
from lightning_pose.data.datatypes import (
HeatmapLabeledBatchDict,
MultiviewHeatmapLabeledBatchDict,
MultiviewUnlabeledBatchDict,
UnlabeledBatchDict,
)
from lightning_pose.data.utils import convert_bbox_coords, undo_affine_transform_batch
from lightning_pose.losses.factory import LossFactory
from lightning_pose.losses.losses import RegressionRMSELoss
from lightning_pose.models.backbones import ALLOWED_BACKBONES
from lightning_pose.models.base import (
BaseSupervisedTracker,
SemiSupervisedTrackerMixin,
)
from lightning_pose.models.heads import HeatmapMHCRNNHead
# to ignore imports for sphix-autoapidoc
__all__ = []
class HeatmapTrackerMHCRNN(BaseSupervisedTracker):
"""Multi-headed Convolutional RNN network that handles context frames."""
[docs]
def __init__(
self,
num_keypoints: int,
num_targets: int | None = None,
loss_factory: LossFactory | None = None,
backbone: ALLOWED_BACKBONES = "resnet50",
pretrained: bool = True,
downsample_factor: Literal[1, 2, 3] = 2,
torch_seed: int = 123,
optimizer: str = "Adam",
optimizer_params: DictConfig | dict | None = None,
lr_scheduler: str = "multisteplr",
lr_scheduler_params: DictConfig | dict | None = None,
**kwargs: Any,
):
"""Initialize a DLC-like model with resnet backbone.
Args:
num_keypoints: number of body parts
loss_factory: object to orchestrate loss computation
backbone: ResNet or EfficientNet variant to be used
pretrained: True to load pretrained imagenet weights
downsample_factor: make heatmap smaller than original frames to save memory; subpixel
operations are performed for increased precision
torch_seed: make weight initialization reproducible
lr_scheduler: how to schedule learning rate
lr_scheduler_params: params for specific learning rate schedulers
- multisteplr: milestones, gamma
"""
if downsample_factor != 2:
raise NotImplementedError("MHCRNN currently only implements downsample_factor=2")
# for reproducible weight initialization
self.torch_seed = torch_seed
torch.manual_seed(torch_seed)
# for backwards compatibility
if "do_context" in kwargs.keys():
del kwargs["do_context"]
super().__init__(
backbone=backbone,
pretrained=pretrained,
optimizer=optimizer,
optimizer_params=optimizer_params,
lr_scheduler=lr_scheduler,
lr_scheduler_params=lr_scheduler_params,
do_context=True,
**kwargs,
)
self.num_keypoints = num_keypoints
if num_targets is None:
self.num_targets = num_keypoints * 2
else:
self.num_targets = num_targets
self.downsample_factor = downsample_factor
self.head = HeatmapMHCRNNHead(
backbone_arch=backbone,
in_channels=self.num_fc_input_features,
out_channels=self.num_keypoints,
downsample_factor=self.downsample_factor,
upsampling_factor=1 if "vit" in backbone else 2,
)
self.loss_factory = loss_factory
# use this to log auxiliary information: pixel_error on labeled data
self.rmse_loss = RegressionRMSELoss()
# necessary so we don't have to pass in model arguments when loading
# also, "loss_factory" and "loss_factory_unsupervised" cannot be pickled
# (loss_factory_unsupervised might come from SemiSupervisedHeatmapTracker.__super__().
# otherwise it's ignored, important so that it doesn't try to pickle the dali loaders)
self.save_hyperparameters(ignore=["loss_factory", "loss_factory_unsupervised"])
[docs]
def forward(
self,
images: Union[
TensorType["batch", "frames", "channels":3, "image_height", "image_width"],
TensorType["batch", "channels":3, "image_height", "image_width"],
TensorType["batch", "view", "frames", "channels":3, "image_height", "image_width"],
TensorType["batch", "view", "channels":3, "image_height", "image_width"],
],
is_multiview: bool = False,
) -> Tuple[
TensorType["num_valid_outputs", "num_keypoints", "heatmap_height", "heatmap_width"],
TensorType["num_valid_outputs", "num_keypoints", "heatmap_height", "heatmap_width"],
]:
"""Forward pass through the network.
Batch options
-------------
- TensorType["batch", "frames", "channels":3, "image_height", "image_width"]
single view, labeled context batch
- TensorType["batch", "channels":3, "image_height", "image_width"]
single view, unlabeled batch from DALI
- TensorType["batch", "view", "frames", "channels":3, "image_height", "image_width"]
multivew, labeled context batch
- TensorType["batch", "view", "channels":3, "image_height", "image_width"]
multiview, unlabeled batch from DALI
"""
shape = images.shape
# get one representation for each frame
representations = self.get_representations(images, is_multiview=is_multiview)
# representations shape is (batch, features, height, width, frames)
# get two heatmaps for each representation (single frame, multi-frame)
heatmaps_sf, heatmaps_mf = self.head(representations, shape, is_multiview)
return heatmaps_sf, heatmaps_mf
[docs]
def predict_step(
self,
batch_dict: Union[
HeatmapLabeledBatchDict,
MultiviewHeatmapLabeledBatchDict,
UnlabeledBatchDict,
],
batch_idx: int,
return_heatmaps: bool | None = False,
) -> Union[
Tuple[torch.Tensor, torch.Tensor],
Tuple[torch.Tensor, torch.Tensor, torch.Tensor],
]:
"""Predict heatmaps and keypoints for a batch of video frames.
Assuming a DALI video loader is passed in
> trainer = Trainer(devices=8, accelerator="gpu")
> predictions = trainer.predict(model, data_loader)
"""
if "images" in batch_dict.keys(): # can't do isinstance(o, c) on TypedDicts
# labeled image dataloaders
images = batch_dict["images"]
else:
# unlabeled dali video dataloaders
images = batch_dict["frames"]
# images -> heatmaps
pred_heatmaps_sf, pred_heatmaps_mf = self.forward(images)
# heatmaps -> keypoints
pred_keypoints_sf, confidence_sf = self.head.run_subpixelmaxima(pred_heatmaps_sf)
pred_keypoints_mf, confidence_mf = self.head.run_subpixelmaxima(pred_heatmaps_mf)
# reshape keypoints to be (batch, n_keypoints, 2)
pred_keypoints_sf = pred_keypoints_sf.reshape(pred_keypoints_sf.shape[0], -1, 2)
pred_keypoints_mf = pred_keypoints_mf.reshape(pred_keypoints_mf.shape[0], -1, 2)
# find higher confidence indices
mf_conf_gt = torch.gt(confidence_mf, confidence_sf)
# select higher confidence indices
pred_keypoints_sf[mf_conf_gt] = pred_keypoints_mf[mf_conf_gt]
pred_keypoints_sf = pred_keypoints_sf.reshape(pred_keypoints_sf.shape[0], -1)
confidence_sf[mf_conf_gt] = confidence_mf[mf_conf_gt]
# bounding box coords -> original image coords
pred_keypoints_sf = convert_bbox_coords(batch_dict, pred_keypoints_sf)
if return_heatmaps:
pred_heatmaps_sf[mf_conf_gt] = pred_heatmaps_mf[mf_conf_gt]
return pred_keypoints_sf, confidence_sf, pred_heatmaps_sf
else:
return pred_keypoints_sf, confidence_sf
[docs]
def get_parameters(self):
params = [
{"params": self.backbone.parameters(), "name": "backbone", "lr": 0.0},
{"params": self.head.parameters(), "name": "head"},
]
return params
@typechecked
class SemiSupervisedHeatmapTrackerMHCRNN(SemiSupervisedTrackerMixin, HeatmapTrackerMHCRNN):
"""Model produces heatmaps of keypoints from labeled/unlabeled images."""
[docs]
def __init__(
self,
num_keypoints: int,
loss_factory: LossFactory | None = None,
loss_factory_unsupervised: LossFactory | None = None,
backbone: ALLOWED_BACKBONES = "resnet50",
downsample_factor: Literal[2, 3] = 2,
pretrained: bool = True,
torch_seed: int = 123,
optimizer: str = "Adam",
optimizer_params: DictConfig | dict | None = None,
lr_scheduler: str = "multisteplr",
lr_scheduler_params: DictConfig | dict | None = None,
**kwargs: Any,
):
"""
Args:
num_keypoints: number of body parts
loss_factory: object to orchestrate supervised loss computation
loss_factory_unsupervised: object to orchestrate unsupervised loss
computation
backbone: ResNet or EfficientNet variant to be used
downsample_factor: make heatmap smaller than original frames to
save memory; subpixel operations are performed for increased
precision
pretrained: True to load pretrained imagenet weights
torch_seed: make weight initialization reproducible
lr_scheduler: how to schedule learning rate
multisteplr
lr_scheduler_params: params for specific learning rate schedulers
multisteplr: milestones, gamma
"""
super().__init__(
num_keypoints=num_keypoints,
loss_factory=loss_factory,
backbone=backbone,
downsample_factor=downsample_factor,
pretrained=pretrained,
torch_seed=torch_seed,
optimizer=optimizer,
optimizer_params=optimizer_params,
lr_scheduler=lr_scheduler,
lr_scheduler_params=lr_scheduler_params,
**kwargs,
)
self.loss_factory_unsup = loss_factory_unsupervised
# this attribute will be modified by AnnealWeight callback during training
# self.register_buffer("total_unsupervised_importance", torch.tensor(1.0))
self.total_unsupervised_importance = torch.tensor(1.0)